Welcome to ChipCheckII

ChipCheck calculates the expected hybridization results for small DNA microarrays. This is version 2.0 of the program, capable of automatically generating thermodynamic data from sequence-information and experimental conditions.

The motivation for writing ChipCheck is explained in a brief introduction to the earlier version of ChipCheck. For a detailed description of the earlier version, please see the first publication on ChipCheck

ChipCheck can be used on two different levels:

  1. calculating the extent of binding of target strands to spots at one, fixed temperature, or
  2. calculating binding (=melting) curves over an entire temperature range.

Choose from the following list how to invoke ChipCheck (according to the data you provide).

Last modified: Fri Jan 12 21:54:56 CST 2007