Software


ChipCheck

A program Predicting total hybridization equilibria for Small DNA Chips.

Click here for access.

Please cite the follow papers:

  1. K. Siegmund, C. Ahlborn, C. Richert, ChipCheckII - Predicting binding curves for multiple analyte strands on small DNA microarrays. Nucleosides Nucleotides Nucl. Acids, 2008, 27, 376-388.
  2. K. Siegmund, U.E. Steiner, C. Richert, ChipCheck - A program predicting total hybridization equilibria for DNA binding to small oligonucleotide microarrays. J. Chem. Inf. Comp. Sci. 2003, 43, 2153-2162.


All software at our site is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation.


MASP

A program predicting mass spectra of combinatorial libraries (WIN95).

Click here for access.

Please cite the follow paper:

  1. C. Steinbeck, K. Berlin, C. Richert, MASP - a program predicting mass spectra of combinatorial libraries. J. Chem. Inf. Comput. Sci., 1997, 37, 449-457.


Automaton

A script for processing of MALDI spectra and calculation of protection factors (PERL)

Click here for access.

Please cite the follow paper:

  1. R.K. Altman, I. Schwope, D.A. Sarracino, C.N. Tetzlaff, C.F. Bleczinski, C. Richert, Selection of modified oligonucleotides with increased target affinity via MALDI-monitored nuclease survival assays, J. Combin. Chem., 1999, 1, 493-508.


DAS

A macro for automated processing of MALDI Spectra (AURA)

Click here for access.

Please cite the follow paper:

  1. R.K. Altman, I. Schwope, D.A. Sarracino, C.N. Tetzlaff, C.F. Bleczinski, C. Richert, Selection of modified oligonucleotides with increased target affinity via MALDI-monitored nuclease survival assays, J. Combin. Chem., 1999, 1, 493-508.